Also, indentation in the YAML header has a meaning, so be careful when aligning text. If you need multiple output formats for your R markdown document check whether your YAML options are compatible between these formats.
#Rmarkdown toc pdf#
Just a note of caution, many of the options you can specify in the YAML header will work with both HTML and pdf formatted documents, but not all. If you want to explore the plethora of other options see here. You can also change the default font and font size for the whole document and even include fancy options such as a table of contents and inline references and a bibliography. If you would like to change the output to pdf format then you can change it from output: html_document to output: pdf_document (you can also set more than one output format if you like). In the YAML header above the output format is set to HTML. title : My first R markdown document author : Jane Doe date : Maoutput : html_document.
I am running Win10, tested for word, pdf and html output respectively.
#Rmarkdown toc manual#
Aside from the fact that numbering doesn't seem to be possible (both automatic and in-header manual numbering, surprisingly, don't show up so far), the subsections of "Methods" are not listed beneath and indented to each other as they would be in a normal toc. I tested it on a friend's computer, and got some weird results. However this would be a great addition to get rid of the pesky standard TOC. I can't test anything right now because my system is bricked, and this is beyond my capabilities anyways. Is there a way to enable automatic chapter numbering comparable to the suboption 'numbered_section=true' in the normal toc-command of the yaml-header? Instead of having a bullet-point list as the TOC, maybe is it possible to recreate this with a numbered list instead?
#Rmarkdown toc code#
Note that the `echo = FALSE` parameter was added to the code chunk to prevent printing of the R code that generated the plot. If ( ! start_at_base_level & level = 0) start_at_base_level <<- TRUE #' `toc_depth = 3`, which results in a TOC of at most 3 levels. #' toc_depth Maximum depth for TOC, relative to base_level.
#' prior to the first header at the base_level are dropped silently. #' base_level Starting level of the lowest header level. #' include the TOC itself in the TOC (but why?). #' header with this format will not be included in the TOC. #' toc_header_name The table of contents header name. #' filename Name of RMarkdown or Markdown document #' Just drop in a chunk where you want the toc to appear (set `echo=FALSE`): #' `toc_header_name` to exclude the table of contents header from the TOC, or #' Table of Contents itself must be manually included in the text. #' Because this function returns only the markdown list, the header for the
#' WARNING: This function only works with hash-tag headers. Returns a markdown list with links to the #' A simple function to extract headers from an RMarkdown or Markdown document
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